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CIF Software
Displaying 61 - 78 of 78printCIF for Word
for visualizing and preparing for publication structure reports submitted to IUCr journals in Word format
publBio
tools and a workspace to prepare the text, experimental data tables, and figures for a structural biology or crystallization communication
Maintenance Status: Active
publCIF
publCIF takes a crystallographic information file (CIF) and prepares a formatted paper (Preprint) in the style of Acta Crystallographica Sections C and E, and IUCrData.
Maintenance Status: Active
Asset ID: 157188
Bibliographic Reference: Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925 [https://doi.org/10.1107/S0021889810022120]
DOI: https://doi.org/10.1107/S0021889810022120
Submitter: Simon Westrip
PyCifRW
provides comprehensive support for reading, writing and validating CIF using Python
pycodcif
Python interface to COD::CIF::Parser for detecting and reporting the most common CIF syntax errors, developed by the team of Crystallography Open Database developers
Maintenance Status: Active
QUASAR
CIF syntax checking and file manipulation tool
RASMOL
molecular graphics visualisation tool
Application Area: Biology, Graphics, Virtual reality, Visualization
Maintenance Status: Active
Asset ID: 50428
Star_Base
Stand-alone application for performing database-style queries on arbitrary STAR Files while preserving context as well as values.
STAR::PARSER
Set of Perl modules for parsing STAR-compliant data files and dictionaries, including CIF and mmCIF, together with example scripts.
StarDOM
software package to transform data provided in the Self Defining Text Archival and Retrieval (STAR) format into XML
Maintenance Status: Active
Syntax test suite for CIF
Small suite of test files conforming (or not) to STAR/CIF syntax rules and designed as an aid to parser development
vcif version 0.58
Maintenance Status: Archive
vcif version 1.2.2
vcif is a simple syntax checker for files in CIF format, including data and dictionary files. It may be used to scan any text file and outputs informative messages about apparent errors in CIF syntax.
Application Area: Databases
Maintenance Status: Archive
Asset ID: 58729
Bibliographic Reference: McMahon, B. (2006). International Tables for Crystallography, Vol. G, ch. 5.3, pp. 499-501.
DOI: https://doi.org/10.1107/97809553602060000753
Submitter: Brian McMahon
VCIF2
vcif2 is an extended version of vcif, the syntax checker for files in CIF format. vcif2 will verify compliance with CIF 1.0, CIF 1.1 or mmCIF file formats; and will accept an arbitrary list of layered DDL1 and DDL2 dictionaries against which units, enumerations, parent-child relationships and category integrity will be checked.
Application Area: Databases
Maintenance Status: Active
Asset ID: 58733
Bibliographic Reference: Todorov, G. & Bernstein, H. J. (2008). J. Appl. Cryst. 41, 808-810.
DOI: https://doi.org/10.1107/S002188980801385X
Submitter: Brian McMahon
vscode-cif
CIF for Visual Studio Code is an extension that adds support for CIF (Crystallographic Information File) to VS Code. Features: syntax highlighting; completion and validation for names; hover over value to see corresponding _key and data_. Known errors: all dictionaries are not yet supported so there may be unnecessary warnings.
Application Area: Data analysis, Other
Maintenance Status: Active
Asset ID: 157046
Submitter: Heikki Kainulainen
Xtal
Package of 60 programs oriented towards small molecule automated structure solution, refinement, visualization, preparing publication quality tables and ORTEPs, CIF reading and writing. Additional leanings towards high precision charge density work - atomic charge calculations, contour and electric field maps +powder pattern calculation and visualization. Developed at the University of Western Australia.
Xtools
Fortran programs to support the development and maintenance of STAR dictionaries written in the dictionary language DDLm. N.B. This is not fully compatible with the current DDLm specifications, but may be a useful starting point for developing in a Fortran environment.
ZINC
interface to CIF for standard Unix tools