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CIF Software

Displaying 1 - 20 of 78
  • ADIT

    deposition tool for depositing macromolecular structures in the Protein Data Bank

    Maintenance Status: Active

  • ADIT validation server

    for checking the format consistency of coordinates and creating validation reports about a structure before deposition in the Protein Data Bank

    Maintenance Status: Active

  • atomes

    atomes is a cross-platform open source program developed to analyze, to visualize and to edit/create large three-dimensional atomic scale models.
    By regrouping advanced analysis techniques, 3D visualization and 3D edition, atomes introduces innovative 3D rendering possibilities and intuitive applications of the calculation results.
    atomes also provides an advanced input preparation system for further calculations using well known classical, ab-initio and QM-MM molecular dynamics codes.
    To prepare the input files for these calculations is likely to be the key, and most complicated step towards MD simulations.atomes offers a user-friendly assistant to help and guide the user step by step to achieve this crucial goal.

    Application Area: Chemistry, Graphics, Materials science, Modelling, Structure, Surface, Visualization

    Maintenance Status: Active

    Asset ID: 160948

    Bibliographic Reference: Le Roux S., Computational Materials Science Volume 253, May 2025, 113805

    DOI: https://doi.org/10.1016/j.commatsci.2025.113805

    Submitter: Sébastien Le Roux

  • CBFlib

    ANSI-C function library for creating, reading, modifying and writing Crystallographic Binary Files (CBF) and image-supporting CIF (imgCIF) data files.

  • cciflib

    library for supporting the CCIF subset of mmCIF used by the CCP4 program suite

    Maintenance Status: Active

  • checkCIF

    reports on the consistency and integrity of crystal structure determinations reported in CIF format

    Maintenance Status: Active

  • CIF++

    (obsolete), CIFDOM and Jumbo components of CML (Chemical Markup Language) software

  • cif2cif

    CIF manipulation program for copying CIFs, checking data names against dictionaries, reformatting numbers to preserve standard uncertainties, and extracting requested data subsets.

  • CIF2CRY

    program for converting structural data and reflection data contained in a CIF into instructions to be read by the CRYSTALS program

  • cif2pdb

    Program for converting an mmCIF data set to a partial pseudo-PDB entry, including coordinate, metadata and record sections sufficient to drive RasMol.

  • cif2sx

    Stand-alone program that converts a legal CIF into a legal SHELXL instruction file, with preferred distribution integrated into the WinGX system.

  • cif2xml

    Program that copies a CIF from standard input to an equivalent XML representation while checking data names against dictionaries and reformatting numbers with standard uncertainties.

  • CIFAPI

    Comprehensive C library for reading and writing CIF, supports both 1.1 and 2.0 formats

    Maintenance Status: Active

  • CIFEDIT

    Program for viewing and editing CIFs, distributed as part of the ciftools package maintained for powder-CIF related work at NIST.

  • CIFFOLD

    Stand-alone application for folding and unfolding long lines in CIF text fields and comments, including conversion between CIF 1.1 long-line files and 80-column CIF 1.0 workflows.

  • CIFIO

    Primary CIF input/output program in the Xtal system, providing CIF-based data exchange, publication submission support, and ASCII archive-file handling for Xtal binary files.

  • CIFLIB

    Software library that provides simple and convenient access to CIF dictionaries and data files.

    Application Area: Structure determination

    Maintenance Status: Active

    Asset ID: 44649

    Bibliographic Reference: Westbrook, J. D. , Hsie, S.-H. & Fitzgerald, P. M. D. (1997). J. Appl. Cryst. 30, 79-83.

    DOI: https://doi.org/10.1107/S0021889896008643

  • CIFOBJ

    class library of mmCIF access tools

    Maintenance Status: Archive

    Asset ID: 17808

  • CIFPARSE

    C-language function library providing convenient and efficient access to mmCIF data files, distributed as part of the RCSB Protein Data Bank software stack.

  • CIFPARSE-OBJ

    Object-oriented package for accessing mmCIF data files and data dictionaries, distributed as part of the RCSB Protein Data Bank software stack.